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Table 2 Top canonical pathways associated with TrkB deletion in mouse striatal MSNs

From: Behavioral and transcriptome alterations in male and female mice with postnatal deletion of TrkB in dorsal striatal medium spiny neurons

Canonical pathway:

-log (p-value):

Ratio:

Molecules:

Thrombin signaling

2.69E + 00

5.34E-02

ARHGEF10, MPRIP, GATA1, RHOT2, ADCY1, GNB5, CAMK1G, HRAS, PRKCH, GNG7, PRKCB

Protein kinase A signaling

2.63E + 00

4.28E-02

SHH, PTPN7, PTPRE, SMAD3, DUSP6, GNB5, PTPN5, TCF7, GNG7, PTEN, ADD3, ADCY1, SMAD4, RYR1, PRKCH, CDC16, PRKCB

Galpha(i) signaling

2.44E + 00

6.06E-02

GRM8, NPY1R, ADCY1, GNB5, HRAS, ADRA2C, STAT3, GNG7

Prolactin signaling

2.39E + 00

7.50E-02

HRAS, PRKCH, STAT3, SOCS5, TCF7, PRKCB

CXCR4 signaling

2.36E + 00

5.36E-02

EGR1, RHOT2, ADCY1, GNB5, HRAS, PRKCH, ELMO1, GNG7, PRKCB

Glutamate receptor signaling

2.18E + 00

7.25E-02

GRM8, SLC1A1, HOMER1, GNG7, GRIK1

Galpha(s) signaling

2.11E + 00

5.79E-02

RGS2, ADD3, ADCY1, GNB5, RYR1, HTR6, GNG7

Cell cycle: G1/S checkpoint regulation

2.06E + 00

7.58E-02

PA2G4, HDAC8, SMAD3, SMAD4, CDKN1B

Beta-adrenergic signaling

2.04E + 00

5.71E-02

ADCY1, GNB5, HRAS, PRKCH, GNG7, PRKCB

Phospholipase C signaling

2.04E + 00

4.23E-02

ARHGEF10, MPRIP, HDAC8, RHOT2, ADCY1, GNB5, ITGA5, HRAS, PRKCH, GNG7, PRKCB

Neuregulin signaling

2.00E + 00

5.88E-02

ITGA5, HRAS, PRKCH, CDKN1B, PTEN, PRKCB

G Beta gamma signaling

2.00E + 00

5.13E-02

ADCY1, GNB5, HRAS, PRKCH, GNG7, PRKCB

RAR activation

1.98E + 00

4.76E-02

SMAD3, ADCY1, SMAD4, PRKCH, ERCC2, PTEN, PPARGC1A, RBP4, PRKCB

Virus entry via endocytic pathways

1.97E + 00

6.06E-02

ITGA5, TFRC, HRAS, PRKCH, CXADR, PRKCB

Chronic myeloid leukemia signaling

1.86E + 00

5.71E-02

PA2G4, HDAC8, SMAD3, SMAD4, HRAS, CDKN1B

Glioma signaling

1.84E + 00

5.36E-02

PA2G4, CAMK1G, HRAS, PRKCH, PTEN, PRKCB

Axonal guidance signaling

1.77E + 00

3.42E-02

SHH, GNB5, HRAS, SEMA6B, ITGA5, FZD1, SLIT2, GIT1, GNG7, NTNG1, SEMA3A, SUFU, BAIAP2, ABLIM2, PRKCH, PRKCB

Breast cancer regulation by stathmin1

1.73E + 00

4.35E-02

ARHGEF10, ADCY1, GNB5, CAMK1G, HRAS, PRKCH, CDKN1B, GNG7, PRKCB

Molecular mechanisms of cancer

1.60E + 00

3.44E-02

SHH, PA2G4, SMAD3, RHOT2, HRAS, FZD1, ARHGEF10, SUFU, ADCY1, SMAD4, PRKCH, CDKN1B, PRKCB

Renin-angiotensin signaling

1.60E + 00

4.80E-02

ADCY1, HRAS, SHC3, PRKCH, STAT3, PRKCB

CREB signaling in neurons

1.56E + 00

3.94E-02

GRM8, ADCY1, GNB5, HRAS, PRKCH, GNG7, GRIK1, PRKCB

Androgen signaling

1.55E + 00

4.17E-02

SMAD3, GNB5, PRKCH, ERCC2, GNG7, PRKCB

ErbB2-ErbB3 signaling

1.51E + 00

6.67E-02

HRAS, STAT3, CDKN1B, PTEN

Calcium signaling

1.48E + 00

3.79E-02

TNNT1, HDAC8, CAMK1G, TPM2, RYR1, TRPC4, CASQ2, GRIK1

14-3-3-mediated signaling

1.45E + 00

4.96E-02

STK11, TSC2, HRAS, PRKCH, CDKN1B, PRKCB

P2Y purigenic receptor signaling pathway

1.42E + 00

4.35E-02

ADCY1, GNB5, HRAS, PRKCH, GNG7, PRKCB

PTEN signaling

1.42E + 00

4.44E-02

INPP5F, FLT1, ITGA5, HRAS, CDKN1B, PTEN

IL-8 signaling

1.41E + 00

3.90E-02

FLT1, RHOT2, GNB5, HRAS, PRKCH, IRAK3, GNG7, PRKCB

cAMP-mediated signaling

1.41E + 00

4.02E-02

RGS2, GRM8, NPY1R, DUSP6, ADCY1, CAMK1G, ADRA2C, HTR6, STAT3

  1. Microarray data were analyzed through the use of IPA (Ingenuity® Systems, http://www.ingenuity.com).
  2. The p-value was calculated using the right-tailed Fisher Exact Test, considering the number of molecules participating in a given pathway and the total number of molecules associated with that pathway in Ingenuity’s knowledge base.