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Table 4 PCR primers for rs76719109 and rs592297 AEI assay

From: An intronic PICALM polymorphism, rs588076, is associated with allelic expression of a PICALMisoform

Assay

DNA

Primer Sense

Primer Sequence

rs76719109

cDNA

Sense

5′CCATCTCATCCCTGCGTGTCTCCGACTCAGxxxxxTGGAGTCAACCAGGTGAAAA

 

cDNA

Anti-sense

5′ CCTCTCTATGGGCAGTCGGTGATTTGGTTGCGTCATTACAGGA

 

gDNA

Sense

5′CCATCTCATCCCTGCGTGTCTCCGACTCAGxxxxxTGGAGTCAACCAGGTGAAAA

 

gDNA

Anti-sense

5′ CCTCTCTATGGGCAGTCGGTGATAGGAGCTTTTTCAACTCACCA

rs592297

cDNA

Sense

5′CCATCTCATCCCTGCGTGTCTCCGACTCAGxxxxxTGAACACAGAAAAACTCCTAAAAA

 

cDNA

Anti-sense

5′ CCTCTCTATGGGCAGTCGGTGATGGCAGCATTTATTACCCCATT

 

gDNA

Sense

5′CCATCTCATCCCTGCGTGTCTCCGACTCAGxxxxxTGAACACAGAAAAACTCCTAAAAA

 

gDNA

Anti-sense

5′ CCTCTCTATGGGCAGTCGGTGATTCTGTGAAAACTTGAGGTTAAAAA

  1. "xxxxx" denotes 5 nucleic acid barcode, which is unique for each individual. Note that gDNA and cDNA were amplified by the same barcoded forward primers. Genomic DNA and cDNA were differentiated by the reverse primers.