chr | GRCh38 location | r2 | D’ | SNP ID | SNP function annotation | Motifs | Regulome DB score |
---|---|---|---|---|---|---|---|
1 | 221,939,292 | 0.81 | 0.91 | rs17011141 | intergenic | DMRT1 | 5 |
1 | 221,940,306 | 0.81 | 0.91 | rs17011146 | intergenic | Barx2, Cdx2, Cdx2, Dbx2, Foxf1, Foxj1, Foxo, Hlx1, Hmx, Hoxa10, Hoxa9, Hoxb13, Hoxb9, Hoxc9, Hoxd8, Myc, Ncx, Nkx6–1, PLZF, Sox | 6 |
1 | 221,940,827 | 0.81 | 0.91 | rs72740077 | intergenic | COMP1, PPAR, RXR::LXR, RXRA, RXRA | 5 |
1 | 221,943,856 | 0.81 | 0.91 | rs7520544 | intergenic | Irf, Pax-5 | ND |
1 | 221,948,533 | 0.8 | 0.91 | rs12123928 | intergenic | Egr-1, Pax-2 | 6 |
1 | 221,952,186 | 0.81 | 0.91 | rs12137323 | intergenic | – | 7 |
1 | 221,954,218 | 0.81 | 0.91 | rs138207318 | intergenic | Zic | ND |
1 | 221,967,912 | 0.82 | 0.91 | rs148737902 | intergenic | – | ND |
1 | 221,974,208 | 1 | 1 | rs371061408 | intronic RP11-815 M8.1 and RP11-400 N13.2 | – | ND |
1 | 221,974,503 | 0.89 | 0.97 | rs12024555 | intronic RP11-815Â M8.1 and RP11-400Â N13.2 | EWSR1-FLI1, Zbtb3 | 7 |
1 | 221,974,877 | 0.89 | 0.96 | rs149685934 | intergenic | CACD, Pou1f1 | 6 |
1 | 221,975,001 | 0.911 | 1 | rs12025420 | intronic RP11-815 M8.1 and RP11-400 N13.2 | – | 6 |
1 | 221,975,210 | 0.884 | 1 | rs12032598 | intronic RP11-815 M8.1 and RP11-400 N13.2 | – | 5 |
1 | 221,975,457 | 0.94 | 0.98 | rs12032653 | intronic RP11-815Â M8.1 and RP11-400Â N13.2 | LF-A1 | 5 |
1 | 221,975,480 | 0.94 | 0.98 | rs12029332 | intronic RP11-815Â M8.1 and RP11-400Â N13.2 | BCL, NRSF | 5 |
1 | 221,975,548 | 0.92 | 0.98 | rs12025565 | intronic RP11-815Â M8.1 and RP11-400Â N13.2 | CAC-binding-protein, EWSR1-FLI1, Ets, Pax-3 | 6 |
1 | 221,975,629 | 0.88 | 0.98 | rs12032715 | intronic RP11-815Â M8.1 and RP11-400Â N13.2 | Foxo, GR, Nanog, Sox | 6 |
1 | 221,975,908 | 0.937 | 1 | rs144092743 | intronic RP11-815 M8.1 and RP11-400 N13.2 | – | 7 |
1 | 221,975,912 | 0.937 | 1 | rs146528420 | intronic RP11-815 M8.1 and RP11-400 N13.2 | – | 7 |
1 | 221,975,917 | 0.937 | 1 | rs141093369 | intronic RP11-815 M8.1 and RP11-400 N13.2 | – | 6 |
1 | 221,976,623 | 1 | 1 | rs12026659 | intronic RP11-815 M8.1 and RP11-400 N13.2 | – | 7 |
1 | 221,980,119 | 0.94 | 0.98 | rs12129860 | intronic RP11-400Â N13.2 | AP-2, Maf, Zbtb3 | 7 |
1 | 221,981,726 | 0.99 | 1 | rs12033415 | intronic RP11-400 N13.2 | – | 5 |
1 | 221,985,808 | 0.99 | 1 | rs12140604 | intergenic | Esr2, GATA, RORalpha1, Zbtb3 | 5 |
1 | 221,986,027 - 221,986,055 | 1 | 1 | rs138253686 | intergenic | – | 7 |
1 | 221,988,647 | 1 | 1 | rs6695584 | intergenic | PPAR, RXRA | 5 |
1 | 221,989,031 | 1 | 1 | rs6691195 | intergenic | – | ND |
1 | 221,990,985 | 0.99 | 1 | rs17011182 | intergenic | Hlx1, Hoxa9, Nanog, Pou4f3, Sox | 5 |
1 | 221,991,606 | 1 | 1 | rs6687758 | intergenic | Cdx2, Foxf1, Foxl1, Pou2f2, Pou3f3, TATA | 5 |
1 | 221,995,092 | 0.97 | 1 | rs12125383 | intergenic | Nanog, Pou5f1, Pou5f1 | 4 |
1 | 221,996,081 | 0.92 | 0.99 | rs34280100 | intergenic | AP-1, AP-2, ATF3, BCL, BHLHE40, CCNT2, CHD2, E2F, EBF, Egr-1, Ets, GR, HEN1, Irf, Klf4, Klf7, MAZ, MAZR, MOVO-B, Myc, NRSF, Nrf1, PLAG1, Pax-4, Pou2f2, RREB-1, SP1, SRF, STAT, Sp4, TATA, UF1H3BETA, WT1, YY1, ZNF219, Zfp281, Zfp740, Znf143 | 5 |
1 | 222,002,851-222,002,852 | 0.939 | 1 | rs141044286 | intergenic | – | 6 |
1 | 222,004,252-222,004,253 | 1 | 1 | rs552801974 | intergenic | – | NF |
1 | 222,005,490-222,005,491 | 0.939 | 1 | rs72221064 | intergenic | – | 6 |
1 | 222,006,808 | 0.94 | 0.99 | rs17442058 | intergenic | Hand1, Hoxa9, Hoxb13, Hoxb9, Hoxd10, Mef2, SP1, YY1, Zfp105 | 2b |
1 | 222,009,847 | 0.92 | 0.98 | rs12739936 | intergenic | Zbtb3 | 7 |
1 | 222,013,781 | 0.92 | 0.98 | rs11118926 | intergenic | Egr-1, Ets, MZF1::1–4, Nrf-2, Nrf1, Pax-5, TATA | 5 |
1 | 222,015,280 | 0.92 | 0.98 | rs35805428 | intergenic | Bcl6b, Hoxb6, STAT | 7 |
1 | 222,016,251 | 0.92 | 0.98 | rs17495159 | intergenic | CEBPA, CEBPB | 6 |
1 | 222,016,322 | 0.92 | 0.98 | rs35212520 | intergenic | YY1 | 6 |
1 | 222,016,779 | 0.92 | 0.98 | rs12731064 | intergenic | EBF, Elf5 | 7 |
1 | 222,018,163 | 0.92 | 0.98 | rs17011200 | intergenic | CDP, E2F, Evi-1, Smad3 | 5 |
1 | 222,018,592 | 0.92 | 0.98 | rs66666316 | intergenic | AP-1, Egr-1, Ets, Glis2, MAZR, MOVO-B, Myc, Pax-4, RREB-1, SP1, SRF, UF1H3BETA, YY1, ZNF219, Zfp281, Zfp740 | 6 |
1 | 222,019,622 | 0.92 | 0.98 | rs17442323 | intergenic | CTCF | 7 |
1 | 222,021,538 | 0.92 | 0.98 | rs12121134 | intergenic | Myc | 7 |
1 | 222,024,527 | 0.91 | 0.97 | rs56170536 | intergenic | NF-AT, SPIB, TATA, ZEB1, p300 | 5 |
1 | 222,025,330 | 0.91 | 0.97 | rs12125368 | intergenic | RORalpha1, RXRA | 7 |
1 | 222,026,325 | 0.91 | 0.97 | rs66732677 | intergenic | HNF1, Pbx-1, RFX5 | ND |
1 | 222,034,659-222,034,660 | 0.911 | 1 | rs71167281 | intergenic | – | ND |
1 | 222,045,419 | 0.84 | 0.96 | rs12135286 | intergenic | EBF, Nkx2, PPAR | 5 |
1 | 222,046,411 | 0.85 | 0.96 | rs35718308 | intergenic | Mef2, ZBTB33 | 7 |