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Table 4 GWAS signal set for rs6687758

From: Replication of progressive supranuclear palsy genome-wide association study identifies SLCO1A2 and DUSP10 as new susceptibility loci

chr GRCh38 location r2 D’ SNP ID SNP function annotation Motifs Regulome DB score
1 221,939,292 0.81 0.91 rs17011141 intergenic DMRT1 5
1 221,940,306 0.81 0.91 rs17011146 intergenic Barx2, Cdx2, Cdx2, Dbx2, Foxf1, Foxj1, Foxo, Hlx1, Hmx, Hoxa10, Hoxa9, Hoxb13, Hoxb9, Hoxc9, Hoxd8, Myc, Ncx, Nkx6–1, PLZF, Sox 6
1 221,940,827 0.81 0.91 rs72740077 intergenic COMP1, PPAR, RXR::LXR, RXRA, RXRA 5
1 221,943,856 0.81 0.91 rs7520544 intergenic Irf, Pax-5 ND
1 221,948,533 0.8 0.91 rs12123928 intergenic Egr-1, Pax-2 6
1 221,952,186 0.81 0.91 rs12137323 intergenic 7
1 221,954,218 0.81 0.91 rs138207318 intergenic Zic ND
1 221,967,912 0.82 0.91 rs148737902 intergenic ND
1 221,974,208 1 1 rs371061408 intronic RP11-815 M8.1 and RP11-400 N13.2 ND
1 221,974,503 0.89 0.97 rs12024555 intronic RP11-815 M8.1 and RP11-400 N13.2 EWSR1-FLI1, Zbtb3 7
1 221,974,877 0.89 0.96 rs149685934 intergenic CACD, Pou1f1 6
1 221,975,001 0.911 1 rs12025420 intronic RP11-815 M8.1 and RP11-400 N13.2 6
1 221,975,210 0.884 1 rs12032598 intronic RP11-815 M8.1 and RP11-400 N13.2 5
1 221,975,457 0.94 0.98 rs12032653 intronic RP11-815 M8.1 and RP11-400 N13.2 LF-A1 5
1 221,975,480 0.94 0.98 rs12029332 intronic RP11-815 M8.1 and RP11-400 N13.2 BCL, NRSF 5
1 221,975,548 0.92 0.98 rs12025565 intronic RP11-815 M8.1 and RP11-400 N13.2 CAC-binding-protein, EWSR1-FLI1, Ets, Pax-3 6
1 221,975,629 0.88 0.98 rs12032715 intronic RP11-815 M8.1 and RP11-400 N13.2 Foxo, GR, Nanog, Sox 6
1 221,975,908 0.937 1 rs144092743 intronic RP11-815 M8.1 and RP11-400 N13.2 7
1 221,975,912 0.937 1 rs146528420 intronic RP11-815 M8.1 and RP11-400 N13.2 7
1 221,975,917 0.937 1 rs141093369 intronic RP11-815 M8.1 and RP11-400 N13.2 6
1 221,976,623 1 1 rs12026659 intronic RP11-815 M8.1 and RP11-400 N13.2 7
1 221,980,119 0.94 0.98 rs12129860 intronic RP11-400 N13.2 AP-2, Maf, Zbtb3 7
1 221,981,726 0.99 1 rs12033415 intronic RP11-400 N13.2 5
1 221,985,808 0.99 1 rs12140604 intergenic Esr2, GATA, RORalpha1, Zbtb3 5
1 221,986,027 - 221,986,055 1 1 rs138253686 intergenic 7
1 221,988,647 1 1 rs6695584 intergenic PPAR, RXRA 5
1 221,989,031 1 1 rs6691195 intergenic ND
1 221,990,985 0.99 1 rs17011182 intergenic Hlx1, Hoxa9, Nanog, Pou4f3, Sox 5
1 221,991,606 1 1 rs6687758 intergenic Cdx2, Foxf1, Foxl1, Pou2f2, Pou3f3, TATA 5
1 221,995,092 0.97 1 rs12125383 intergenic Nanog, Pou5f1, Pou5f1 4
1 221,996,081 0.92 0.99 rs34280100 intergenic AP-1, AP-2, ATF3, BCL, BHLHE40, CCNT2, CHD2, E2F, EBF, Egr-1, Ets, GR, HEN1, Irf, Klf4, Klf7, MAZ, MAZR, MOVO-B, Myc, NRSF, Nrf1, PLAG1, Pax-4, Pou2f2, RREB-1, SP1, SRF, STAT, Sp4, TATA, UF1H3BETA, WT1, YY1, ZNF219, Zfp281, Zfp740, Znf143 5
1 222,002,851-222,002,852 0.939 1 rs141044286 intergenic 6
1 222,004,252-222,004,253 1 1 rs552801974 intergenic NF
1 222,005,490-222,005,491 0.939 1 rs72221064 intergenic 6
1 222,006,808 0.94 0.99 rs17442058 intergenic Hand1, Hoxa9, Hoxb13, Hoxb9, Hoxd10, Mef2, SP1, YY1, Zfp105 2b
1 222,009,847 0.92 0.98 rs12739936 intergenic Zbtb3 7
1 222,013,781 0.92 0.98 rs11118926 intergenic Egr-1, Ets, MZF1::1–4, Nrf-2, Nrf1, Pax-5, TATA 5
1 222,015,280 0.92 0.98 rs35805428 intergenic Bcl6b, Hoxb6, STAT 7
1 222,016,251 0.92 0.98 rs17495159 intergenic CEBPA, CEBPB 6
1 222,016,322 0.92 0.98 rs35212520 intergenic YY1 6
1 222,016,779 0.92 0.98 rs12731064 intergenic EBF, Elf5 7
1 222,018,163 0.92 0.98 rs17011200 intergenic CDP, E2F, Evi-1, Smad3 5
1 222,018,592 0.92 0.98 rs66666316 intergenic AP-1, Egr-1, Ets, Glis2, MAZR, MOVO-B, Myc, Pax-4, RREB-1, SP1, SRF, UF1H3BETA, YY1, ZNF219, Zfp281, Zfp740 6
1 222,019,622 0.92 0.98 rs17442323 intergenic CTCF 7
1 222,021,538 0.92 0.98 rs12121134 intergenic Myc 7
1 222,024,527 0.91 0.97 rs56170536 intergenic NF-AT, SPIB, TATA, ZEB1, p300 5
1 222,025,330 0.91 0.97 rs12125368 intergenic RORalpha1, RXRA 7
1 222,026,325 0.91 0.97 rs66732677 intergenic HNF1, Pbx-1, RFX5 ND
1 222,034,659-222,034,660 0.911 1 rs71167281 intergenic ND
1 222,045,419 0.84 0.96 rs12135286 intergenic EBF, Nkx2, PPAR 5
1 222,046,411 0.85 0.96 rs35718308 intergenic Mef2, ZBTB33 7