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Table 4 GWAS signal set for rs6687758

From: Replication of progressive supranuclear palsy genome-wide association study identifies SLCO1A2 and DUSP10 as new susceptibility loci

chr

GRCh38 location

r2

D’

SNP ID

SNP function annotation

Motifs

Regulome DB score

1

221,939,292

0.81

0.91

rs17011141

intergenic

DMRT1

5

1

221,940,306

0.81

0.91

rs17011146

intergenic

Barx2, Cdx2, Cdx2, Dbx2, Foxf1, Foxj1, Foxo, Hlx1, Hmx, Hoxa10, Hoxa9, Hoxb13, Hoxb9, Hoxc9, Hoxd8, Myc, Ncx, Nkx6–1, PLZF, Sox

6

1

221,940,827

0.81

0.91

rs72740077

intergenic

COMP1, PPAR, RXR::LXR, RXRA, RXRA

5

1

221,943,856

0.81

0.91

rs7520544

intergenic

Irf, Pax-5

ND

1

221,948,533

0.8

0.91

rs12123928

intergenic

Egr-1, Pax-2

6

1

221,952,186

0.81

0.91

rs12137323

intergenic

–

7

1

221,954,218

0.81

0.91

rs138207318

intergenic

Zic

ND

1

221,967,912

0.82

0.91

rs148737902

intergenic

–

ND

1

221,974,208

1

1

rs371061408

intronic RP11-815 M8.1 and RP11-400 N13.2

–

ND

1

221,974,503

0.89

0.97

rs12024555

intronic RP11-815 M8.1 and RP11-400 N13.2

EWSR1-FLI1, Zbtb3

7

1

221,974,877

0.89

0.96

rs149685934

intergenic

CACD, Pou1f1

6

1

221,975,001

0.911

1

rs12025420

intronic RP11-815 M8.1 and RP11-400 N13.2

–

6

1

221,975,210

0.884

1

rs12032598

intronic RP11-815 M8.1 and RP11-400 N13.2

–

5

1

221,975,457

0.94

0.98

rs12032653

intronic RP11-815 M8.1 and RP11-400 N13.2

LF-A1

5

1

221,975,480

0.94

0.98

rs12029332

intronic RP11-815 M8.1 and RP11-400 N13.2

BCL, NRSF

5

1

221,975,548

0.92

0.98

rs12025565

intronic RP11-815 M8.1 and RP11-400 N13.2

CAC-binding-protein, EWSR1-FLI1, Ets, Pax-3

6

1

221,975,629

0.88

0.98

rs12032715

intronic RP11-815 M8.1 and RP11-400 N13.2

Foxo, GR, Nanog, Sox

6

1

221,975,908

0.937

1

rs144092743

intronic RP11-815 M8.1 and RP11-400 N13.2

–

7

1

221,975,912

0.937

1

rs146528420

intronic RP11-815 M8.1 and RP11-400 N13.2

–

7

1

221,975,917

0.937

1

rs141093369

intronic RP11-815 M8.1 and RP11-400 N13.2

–

6

1

221,976,623

1

1

rs12026659

intronic RP11-815 M8.1 and RP11-400 N13.2

–

7

1

221,980,119

0.94

0.98

rs12129860

intronic RP11-400 N13.2

AP-2, Maf, Zbtb3

7

1

221,981,726

0.99

1

rs12033415

intronic RP11-400 N13.2

–

5

1

221,985,808

0.99

1

rs12140604

intergenic

Esr2, GATA, RORalpha1, Zbtb3

5

1

221,986,027 - 221,986,055

1

1

rs138253686

intergenic

–

7

1

221,988,647

1

1

rs6695584

intergenic

PPAR, RXRA

5

1

221,989,031

1

1

rs6691195

intergenic

–

ND

1

221,990,985

0.99

1

rs17011182

intergenic

Hlx1, Hoxa9, Nanog, Pou4f3, Sox

5

1

221,991,606

1

1

rs6687758

intergenic

Cdx2, Foxf1, Foxl1, Pou2f2, Pou3f3, TATA

5

1

221,995,092

0.97

1

rs12125383

intergenic

Nanog, Pou5f1, Pou5f1

4

1

221,996,081

0.92

0.99

rs34280100

intergenic

AP-1, AP-2, ATF3, BCL, BHLHE40, CCNT2, CHD2, E2F, EBF, Egr-1, Ets, GR, HEN1, Irf, Klf4, Klf7, MAZ, MAZR, MOVO-B, Myc, NRSF, Nrf1, PLAG1, Pax-4, Pou2f2, RREB-1, SP1, SRF, STAT, Sp4, TATA, UF1H3BETA, WT1, YY1, ZNF219, Zfp281, Zfp740, Znf143

5

1

222,002,851-222,002,852

0.939

1

rs141044286

intergenic

–

6

1

222,004,252-222,004,253

1

1

rs552801974

intergenic

–

NF

1

222,005,490-222,005,491

0.939

1

rs72221064

intergenic

–

6

1

222,006,808

0.94

0.99

rs17442058

intergenic

Hand1, Hoxa9, Hoxb13, Hoxb9, Hoxd10, Mef2, SP1, YY1, Zfp105

2b

1

222,009,847

0.92

0.98

rs12739936

intergenic

Zbtb3

7

1

222,013,781

0.92

0.98

rs11118926

intergenic

Egr-1, Ets, MZF1::1–4, Nrf-2, Nrf1, Pax-5, TATA

5

1

222,015,280

0.92

0.98

rs35805428

intergenic

Bcl6b, Hoxb6, STAT

7

1

222,016,251

0.92

0.98

rs17495159

intergenic

CEBPA, CEBPB

6

1

222,016,322

0.92

0.98

rs35212520

intergenic

YY1

6

1

222,016,779

0.92

0.98

rs12731064

intergenic

EBF, Elf5

7

1

222,018,163

0.92

0.98

rs17011200

intergenic

CDP, E2F, Evi-1, Smad3

5

1

222,018,592

0.92

0.98

rs66666316

intergenic

AP-1, Egr-1, Ets, Glis2, MAZR, MOVO-B, Myc, Pax-4, RREB-1, SP1, SRF, UF1H3BETA, YY1, ZNF219, Zfp281, Zfp740

6

1

222,019,622

0.92

0.98

rs17442323

intergenic

CTCF

7

1

222,021,538

0.92

0.98

rs12121134

intergenic

Myc

7

1

222,024,527

0.91

0.97

rs56170536

intergenic

NF-AT, SPIB, TATA, ZEB1, p300

5

1

222,025,330

0.91

0.97

rs12125368

intergenic

RORalpha1, RXRA

7

1

222,026,325

0.91

0.97

rs66732677

intergenic

HNF1, Pbx-1, RFX5

ND

1

222,034,659-222,034,660

0.911

1

rs71167281

intergenic

–

ND

1

222,045,419

0.84

0.96

rs12135286

intergenic

EBF, Nkx2, PPAR

5

1

222,046,411

0.85

0.96

rs35718308

intergenic

Mef2, ZBTB33

7