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Table 2 Top 10 GO terms relevant to 488 downregulated genes in E13.5 Nrf1f/f; Six3-Cre retinas

From: Essential roles of mitochondrial biogenesis regulator Nrf1 in retinal development and homeostasis

Rank

GO Category

GO ID

GO Term

Number of Focused Genes

P Value

FDR

1

GOTERM_BP_FAT

GO:0030182

nervous system development

156

1.70E-39

6.96E-36

2

GOTERM_BP_FAT

GO:0048666

neurogenesis

126

1.80E-35

3.80E-32

3

GOTERM_BP_FAT

GO:0031175

neuron differentiation

114

1.40E-34

2.00E-31

4

GOTERM_BP_FAT

GO:0048667

generation of neurons

119

8.00E-34

8.40E-31

5

GOTERM_BP_FAT

GO:0000904

neuron projection development

91

6.90E-33

5.80E-30

6

GOTERM_BP_FAT

GO:0048812

neuron development

99

7.00E-33

4.90E-30

7

GOTERM_BP_FAT

GO:0007409

neuron projection morphogenesis

68

5.00E-29

3.00E-26

8

GOTERM_BP_FAT

GO:0030030

cell morphogenesis involved in neuron differentiation

62

5.50E-26

2.90E-23

9

GOTERM_BP_FAT

GO:0019226

axonogenesis

55

2.70E-25

1.30E-22

10

GOTERM_BP_FAT

GO:0048858

cell projection organization

99

1.40E-24

5.90E-22

1

GOTERM_CC_FAT

GO:0030424

axon

54

4.00E-27

1.30E-24

2

GOTERM_CC_FAT

GO:0045202

synapse

57

5.30E-23

8.90E-21

3

GOTERM_CC_FAT

GO:0043025

neuronal cell body

58

1.40E-22

1.60E-20

4

GOTERM_CC_FAT

GO:0043005

neuron projection

51

5.70E-22

4.80E-20

5

GOTERM_CC_FAT

GO:0016020

membrane

243

9.40E-16

6.00E-14

6

GOTERM_CC_FAT

GO:0030425

dendrite

46

1.90E-15

1.10E-13

7

GOTERM_CC_FAT

GO:0010469

postsynaptic density

31

1.10E-14

1.70E-12

8

GOTERM_CC_FAT

GO:0030054

cell junction

53

1.80E-13

7.50E-12

9

GOTERM_CC_FAT

GO:0043195

terminal bouton

21

1.10E-12

4.10E-11

10

GOTERM_CC_FAT

GO:0030426

growth cone

24

1.80E-12

6.10E-11

1

GOTERM_MF_FAT

GO:0008092

cytoskeletal protein binding

52

2.40E-10

2.40E-07

2

GOTERM_MF_FAT

GO:0022836

gated channel activity

26

6.10E-08

2.70E-05

3

GOTERM_MF_FAT

GO:0005216

ion channel activity

29

2.60E-07

7.50E-05

4

GOTERM_MF_FAT

GO:0022838

substrate-specific channel activity

29

4.90E-07

1.10E-04

5

GOTERM_MF_FAT

GO:0015631

tubulin binding

23

7.60E-07

1.30E-04

6

GOTERM_MF_FAT

GO:0005261

cation channel activity

23

1.20E-06

1.80E-04

7

GOTERM_MF_FAT

GO:0022803

passive transmembrane transporter activity

29

2.00E-06

2.50E-04

8

GOTERM_MF_FAT

GO:0015267

channel activity

29

2.00E-06

2.50E-04

9

GOTERM_MF_FAT

GO:0019905

syntaxin binding

12

7.10E-06

7.80E-04

10

GOTERM_MF_FAT

GO:0017075

syntaxin-1 binding

7

1.10E-05

1.00E-03

  1. GO gene ontology, FDR false discovery rate