Table 2 Genes annotated to the top replicated DARs

 PTPRH

introns

19

55,718,568–55,720,750

55,720,288–55,722,414, 55,717,912–55,719,103

1.7E-07

−0.81, −0.94

Peak_20188, Peak_15767

3^p/4 (0.8)

 JUP

introns

17

39,681,526–39,923,630

39,805,764–39,808,133, 39,807,092–39,808,006

1.1E-05

−0.43, − 0.99

Peak_53983, Peak_81536

5^p/10^p (0.5)

 DLG2^a

exons

11

83,874,504–83,874,554

83,873,551–83,879,844, 83,873,666–83,877,544

7.7E-12

0.68, 1.05

Peak_21808, Peak_40741

30^p/49^p(0.6)

 KIT

exons

4

55,604,595–55,606,881

55,606,747–55,609,274, 55,606,782–55,609,553

8.1E-11

0.63, 1.26

Peak_21777, Peak_37103

2/3^p (0.7)

 CNTNAP2

exons

7

147,336,198–147,336,398

147,333,973–147,338,260, 147,333,944–147,337,213

6.2E-09

0.51, 1.07

Peak_44999, Peak_47588

11/18^p (0.6)

RNF216

introns

7

5,681,008–5,692,043

5,679,685–5,685,127, 5,688,370–5,705,729

1.2E-08

0.6, 0.53

Peak_38631, Peak_12618

11^p/16 (0.7)

 FRMD5

introns

15

44,216,508–44,393,656

44,260,324–44,263,821, 44,244,249–44,247,825

1.6E-08

0.68, 0.67

Peak_18018, Peak_18744

12^p/17^p(0.7)

 SOX2-OT

introns

3

181,328,718–181,417,385

181,358,880–181,360,150, 181,341,154–181,348,014

1.7E-08

0.55, 0.91

Peak_43667, Peak_31549

9/12 (0.8)

 MAGI2

1to5kb

7

78,120,338–78,124,337

78,121,257–78,128,843, 78,115,190–78,121,170

2.2E-08

0.4, 0.93

Peak_18816, Peak_24042

9^p/23 (0.4)

 PPP2R2B

introns

5

146,080,706–146,460,621

146,383,635–146,384,203, 146,459,075–146,469,815

2.8E-08

1.3, 0.52

Peak_135972, Peak_17645

17^p/27^p(0.6)

 KCNH1

introns

1

210,948,887–210,970,849

210,966,438–210,969,215, 210,946,491–210,950,181

3.8E-08

0.55, 1.0

Peak_51838, Peak_38212

9/18^p (0.5)

 CDH1

introns

16

68,835,797–68,842,326

68,840,159–68,841,130, 68,782,065–68,837,136

4.8E-08

0.84, 0.37

Peak_66179, Peak_3389

5/7^p (0.7)

 MAP 4 K4^a

introns

2

102,315,001–102,407,181

102,330,963–102,334,475, 102,367,013–102,375,949

5.2E-08

0.54, 0.62

Peak_30093, Peak_9009

10^p/24^p(0.4)

 METTL24

introns

6

110,644,076–110,729,536

110,656,829–110,661,962, 110,685,537–110,688,887

5.4E-08

0.48, 0.97

Peak_22739, Peak_27591

8/13^p(0.6)

 PIP4K2A

introns

10

22,898,647–23,003,111

22,934,570–22,952,399, 22,957,818–22,962,517

5.6E-08

0.58, 0.52

Peak_22480, Peak_27954

9^p/18^p(0.5)

 SIK3

introns

11

116,827,781–116,968,858

116,825,819–116,835,556, 116,846,923–116,884,577

5.8E-08

0.6, 0.49

Peak_21504, Peak_11226

13^p/16^p(0.8)

 DOCK10

introns

2

225,796,386–225,906,968

225,798,681–225,800,264, 225,845,772–225,849,871

8.1E-08

0.61, 0.77

Peak_94440, Peak_22866

6/10^p(0.6)

 CRHR1^a

introns

17

43,707,525–43,750,192

43,726,544–43,728,643, 43,741,886–43,747,152

2.0E-07

0.43, 0.83

Peak_74390, Peak_30944

6/14^p(0.4)

 MBNL2^a

introns

13

97,873,814–97,927,885

97,919,075–97,922,481, 97,906,667–97,916,758

1.2E-05

0.44, 0.44

Peak_29656, Peak_16279

14^p/22^p(0.6)