From: Identification of sixteen novel candidate genes for late onset Parkinson’s disease
CHR | Genomic position (hg19) | dbSNP | Gene | RefSEq | Nucleotide Change | AA Change | Exonic Function | Cl | MAF Max in public data sets | CADD phred | Family |
---|---|---|---|---|---|---|---|---|---|---|---|
16 | 723,544 | rs143816083 | RHOT2 | NM_138769 | c.G1795T | p.G599W | NSV | N | 0.0001 | 25 | 1 |
3 | 184,039,223 | rs746291399 | EIF4G1 | NM_198241 | c.C851G | p.S284C | NSV | N | 0.00004 | 25 | 2 |
1 | 8,022,928 | rs142405016 | PARK7 | NM_007262 | c.G83A | p.R28Q | NSV | 0.0002 | 35 | 5 | |
7 | 6,062,997 | rs749728733 | AIMP2 | NM_006303 | c.T638C | p.I213T | NSV | N | 0.00002 | 27 | 7 |
2 | 86,408,450 | rs201861204 | IMMT | NM_001100169 | c.C91T | p.R31C | NSV | N | 0.0002 | 26 | 7 |
1 | 20,971,042 | rs74315358 | PINK1 | NM_032409 | c.G836A | p.R279H | NSV | P | 0.00004 | 26 | 7 |
16 | 89,717,990 | CHMP1A | NM_002768 | c.C92T | p.A31V | NSV | N | NA | 23 | 9 | |
2 | 74,757,823 | HTRA2 | NM_013247 | c.A586G | p.N196D | NSV | N | NA | 23 | 9 | |
3 | 132,222,165 | DNAJC13 | NM_015268 | c.C4824G | p.S1608R | NSV | N | NA | 20 | 10 | |
17 | 42,398,033 | SLC25A39 | NM_001143780 | c.C758A | p.T253N | NSV | N | NA | 21 | 10 | |
2 | 54,895,594 | rs200093475 | SPTBN1 | NM_003128 | c.C6983A | p.T2328N | NSV | N | 0.00004 | 27 | 12 |
22 | 39,078,021 | rs200476832 | TOMM22 | NM_020243 | c.C38T | p.P13L | NSV | N | 0.0002 | 25 | 12 |
19 | 14,589,354 | GIPC1 | NM_202470 | c.875dupA | p.K292fs | Fs_ins | N | NA | NA | 13 | |
6 | 162,394,354 | rs114974496 | PARK2 | NM_004562 | c.C714G | p.C238W | NSV | P | 0.00004 | 25 | 13 |
5 | 121,787,252 | rs751412863 | SNCAIP | NM_005460 | c.A2710G | p.K904E | NSV | N | 0.00004 | 24 | 14 |
12 | 40,704,237 | rs34995376 | LRRK2 | NM_198578 | c.G4322A | p.R1441H | NSV | P | 0.00001 | 27 | 14 |
7 | 99,654,828 | ZSCAN21 | NM_145914 | c.C199T | p.R67W | NSV | N | NA | 24 | 16 | |
9 | 34,290,328 | rs372797268 | KIF24 | NM_194313 | c.T971C | p.I324T | NSV | N | 0.0001 | 26 | 17 |
16 | 10,911,991 | TVP23A | NM_001079512 | c.G58T | p.E20X | stopgain | N | NA | 38 | 18 | |
1 | 65,858,474 | DNAJC6 | NM_001256864 | c.C1829T | p.P610L | NSV | N | NA | 23 | 19 | |
15 | 75,652,021 | MAN2C1 | NM_001256494 | c.1882_1887del | p.628_629del | NFs_del | N | NA | NA | 19 | |
15 | 75,652,016 | MAN2C1 | NM_001256494 | c.1890_1892del | p.630_631del | NFs_del | N | NA | NA | 19 | |
22 | 32,870,999 | FBXO7 | NM_012179 | c.C10T | p.R4W | NSV | N | NA | 33 | 20 | |
16 | 4,557,822 | rs772245870 | HMOX2 | NM_001286271 | c.C226T | p.R76W | NSV | N | 0.00001 | 34 | 20 |
1 | 200,957,957 | rs751952433 | KIF21B | NM_001252100 | c.G3235A | p.A1079T | NSV | N | 0.00002 | 29 | 21 |
11 | 122,931,465 | HSPA8 | NM_006597 | c.G247A | p.V83I | NSV | N | NA | 21 | 24 | |
4 | 947,062 | TMEM175 | NM_032326 | c.C547T | p.R183X | stopgain | N | NA | 34 | 25 | |
1 | 200,974,537 | KIF21B | NM_001252100 | c.C631T | p.R211C | NSV | N | NA | 34 | 26 |