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Table 3 List of reactions for Model 2

From: Aggregation, impaired degradation and immunization targeting of amyloid-beta dimers in Alzheimer’s disease: a stochastic modelling approach

Reaction id

Reactants

Products

Kinetic rate law

AbetaProduction

Source

Abeta

k prod

AbetaDegradation

Abeta

Sink

k deg Abeta (Normal rate)

k deg Abeta * Nep (AD rate)

Dimerisation

2Abeta

AbDim

k dimer Abeta*(Abeta-1)*0.5

Dedimerisation

AbDim

2Abeta

k dedimer AbDim

PlaqueFormation

AbDim

AbP

k pf AbDim*(AbDim-1)*0.5

PlaqueGrowth

Abeta, AbP

2AbP

k pg Abeta*(AbP2/(k pghalf 2 + AbP2))

Disaggregation

AbP

Abeta

k disagg AbP

NeprilysinDegradation

Nep

Sink

k degNep *Nep