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Table 2 Candidate variants identified by whole exome sequencing

From: The RAB39B p.G192R mutation causes X-linked dominant Parkinson’s disease

Gene

Position (hg19)

Transcript

dbSNP

Variation

Allele frequency (%)a

CADD score

Segregationb

Nucleotide

Amino acid

USP1

Chr1:62910424

NM_001017415.1

c.573G > A

p.M191I

0

27.1

5/6

MVP

Chr16:29859222

NM_005115.4

rs151174471

c.2594G > T

p.G865V

0.07

7.19

5/6

RAB39B

ChrX:154490156

NM_171998.2

c.574G > A

p.G192R

0

29.4

6/6

  1. CADD Combined Annotation Dependent Depletion
  2. aFrequency among chromosomes successfully sequenced for USP1 (n = 111,418), MVP (n = 121,248), and RAB39B (n = 87,725) in the Exome Aggregation Consortium database (http://exac.broadinstitute.org)
  3. bNumber of affected individuals with the variant/total number of affected individuals with genotypes in the pedigree