Table 1 cis-eQTL revealing functional effects of rs10128627 in human brain tissues and whole blood
Target protein | Tissues | Effect size | P value | PMID |
|---|---|---|---|---|
Data from QTLbase | Â | Â | Â | |
NEAT1 | Blood | -0.34 | 2.78E-06 | 25,951,796 |
NEAT1 | Blood | -0.36 | 9.33E-07 | 25,951,796 |
NEAT1 | Brain | 0.37 | 7.07E-06 | 25,954,001 |
NEAT1 | Brain – Cerebellum | 0.57 | 5.36E-07 | 25,954,001 |
LTBP3 | Blood | 0.14 | 2.43E-06 | 25,954,001 |
LTBP3 | Brain - Hippocampus | -0.40 | 3.73E-06 | 32,203,495 |
SNX32 | Brain | 0.08 | 7.06E-06 | 30,545,857 |
Data from GTEx | Â | Â | Â | Â |
NEAT1 | Brain - Cerebellum | 0.7 | 8.80E-12 | 29,955,180 |
NEAT1 | Brain - Cerebellar Hemisphere | 0.69 | 5.40E-11 | 29,955,180 |
NEAT1 | Brain - Frontal Cortex (BA9) | 0.44 | 2.40E-09 | 29,955,180 |
NEAT1 | Brain - Putamen (basal ganglia) | 0.51 | 3.30E-09 | 29,955,180 |
NEAT1 | Brain - Nucleus accumbens (basal ganglia) | 0.37 | 4.10E-09 | 29,955,180 |
NEAT1 | Brain - Substantia nigra | 0.8 | 2.10E-08 | 29,955,180 |
CAPN1 | Whole Blood | -0.1 | 9.00E-08 | 29,955,180 |
LTBP3 | Whole Blood | 0.11 | 2.10E-07 | 29,955,180 |
NEAT1 | Whole Blood | 0.14 | 2.50E-07 | 29,955,180 |
NEAT1 | Brain - Anterior cingulate cortex (BA24) | 0.43 | 1.20E-06 | 29,955,180 |
NEAT1 | Brain - Hypothalamus | 0.43 | 2.60E-06 | 29,955,180 |
NEAT1 | Brain - Caudate (basal ganglia) | 0.34 | 2.90E-06 | 29,955,180 |