- Research article
- Open Access
Quantitative connection between polyglutamine aggregation kinetics and neurodegenerative process in patients with Huntington’s disease
© Sugaya and Matsubara; licensee BioMed Central Ltd. 2012
- Received: 5 October 2011
- Accepted: 16 April 2012
- Published: 14 May 2012
Despite enormous progress in elucidating the biophysics of aggregation, no cause-and-effect relationship between protein aggregation and neurodegenerative disease has been unequivocally established. Here, we derived several risk-based stochastic kinetic models that assess genotype/phenotype correlations in patients with Huntington’s disease (HD) caused by the expansion of a CAG repeat. Fascinating disease-specific aspects of HD include the polyglutamine (polyQ)-length dependence of both age at symptoms onset and the propensity of the expanded polyQ protein to aggregate. In vitro, aggregation of polyQ peptides follows a simple nucleated growth polymerization pathway. Our models that reflect polyQ aggregation kinetics in a nucleated growth polymerization divided aggregate process into the length-dependent nucleation and the nucleation-dependent elongation. In contrast to the repeat-length dependent variability of age at onset, recent studies have shown that the extent of expansion has only a subtle effect on the rate of disease progression, suggesting possible differences in the mechanisms underlying the neurodegenerative process.
Using polyQ-length as an index, these procedures enabled us for the first time to establish a quantitative connection between aggregation kinetics and disease process, including onset and the rate of progression. Although the complexity of disease process in HD, the time course of striatal neurodegeneration can be precisely predicted by the mathematical model in which neurodegeneration occurs by different mechanisms for the initiation and progression of disease processes. Nucleation is sufficient to initiate neuronal loss as a series of random events in time. The stochastic appearance of nucleation in a cell population acts as the constant risk of neuronal cell damage over time, while elongation reduces the risk by nucleation in proportion to the increased extent of the aggregates during disease progression.
Our findings suggest that nucleation is a critical step in gaining toxic effects to the cell, and provide a new insight into the relationship between polyQ aggregation and neurodegenerative process in HD.
- Huntington’s disease
- Polyglutamine aggregation
- Stochastic kinetics model
- Cumulative damage
- One-hit model
- Nucleated growth polymerization
The various disease-specific proteins involved in the distinct polyglutamine (polyQ) diseases, such as Huntington’s disease (HD) and spinocerebellar ataxia (SCA)-3 share no sequence homology, except in the polyQ tract. However, a strong and consistent inverse correlation has been found between the length of the expansion and the age of disease onset [1, 2].
In vitro, aggregation of polyQ peptides follows a simple nucleated growth polymerization pathway . Nucleated growth polymerization is a two-stage process consisting of the energetically unfavourable formation of a nucleus (i.e., nucleation), followed by efficient elongation of that nucleus via sequential addition of monomers . Accordingly, the kinetics of the process feature a long lag time (nucleation lag time) followed by rapid aggregate growth. The detailed mechanism of nucleus generation based on polyQ sequences remains to be understood, however, the kinetic parameters of nucleation are expected to be exponential functions of repeat length .
Recent studies, however, have found multiple pathways underlying disease-related polyQ protein aggregation [6–8]. SCA3 is caused by expansion of the polyQ tract in ataxin-3 . In vitro kinetic studies of ataxin-3 fibrillogenesis have revealed an alternative aggregation pathway in which full-length ataxin-3 has an intrinsic ability to form amyloid-like fibrils independent of the polyQ tract [6, 10]. Remarkably, pre-fibrillar-like aggregates implicated in the toxicity of several neurodegenerative diseases are formed during the process of ataxin-3 aggregation [6, 11]. These observations suggest the presence of a mechanism whereby expansion of the polyQ tract accelerates but is not structurally involved in misfolding of ataxin-3 into toxic intermediate structures.
One explanation of cell death in neurodegenerative disorders is that neurons gradually accumulate insults which ultimately overwhelm cellular homeostasis [12, 13]. One mechanism frequently proposed to cause cumulative damage is oxidative stress [12, 14], in which an imbalance between the production of reactive oxygen species and cellular antioxidant mechanisms results in chemical modifications of macromolecules, thereby disrupting cellular structures and functions. This scenario is supported by recent work in which the biophysics of aggregation were associated with the ‘toxic intermediate’ hypothesis, in which an imbalance occurs between the accumulation of toxic misfolded proteins, such as soluble oligomers/pre-fibrillar aggregates, and cellular protein quality control mechanisms [11, 15].
Soluble oligomeric aggregate of mutant huntingtin (htt) protein in HD was also found in tissues from individuals with HD . Some researchers have sought to advance cumulative-damage hypotheses seeking to explain HD pathogenesis [15, 16]. In such scenarios, pathologic changes proceed at differential rates, depending on the length of expansion. This would result in disease onset when the changes were sufficiently severe to produce a disease symptom. The extent of expansion would then also govern the rate of clinical progression. However, it remains unknown whether the factors governing symptom onset also control clinical progression of HD. A large prospective study, assessed using clinical measures, suggested that polyQ-length had only a subtle effect on the rate of disease progression . What mechanism of the disease progression might explain this discrepancy? Apparently, the cumulative-damage hypothesis cannot explain the exponential relationship between the extent of expansion and age at onset, nor the effect of polyQ-length on the progression of HD.
We first present two risk-based stochastic kinetic models to assess the genotype/phenotype correlations in patients with polyQ diseases. These models reflect the different disease pathomechanisms arising via two alternative aggregation pathways: the first is the cumulative-damage model, while the second is the one-hit model, wherein the one-hit event acts as a constant risk for neuronal cell damage and the kinetics of neuronal loss over time exhibit a first-order exponential function .
The stochastic appearance of nucleation of mutant htt proteins in a homogenous cell population over time could be expressed by a first-order exponential function . If polyQ aggregate is actually related to disease pathogenesis, the probability of nucleation is considered to be a constant risk of neuronal damage regardless of toxicity because of the rate-limiting process of nucleation. In HD, the repeat-length dependent variability of age at onset could be reasonably explained by the length-dependent nucleation of polyQ aggregation kinetics . However, we and others found that one additional polyQ-length independent factor also significantly contributes to the age at disease onset [20–22]. It is assumed that age-of-onset (tA) largely reflects a nucleation lag time (tN) and the additional time (addt) due to the polyQ-length independent factor. One-hit model of neurodegeneration can be improved with stretched-exponential decay models, which most easily fit data in which the rate of death decreases over time, are consistent with multiple populations of cells coexisting, each with a different constant rate of death . However, even when we use a stretched-exponential decay model it alone is not enough to explain the genotype/phenotype correlations. By the regression analyses of polyQ-length versus age-of-onset in patients with HD, we further found that the sum of square relationship (tA2 = tN2 + addt2) showed the best fit among the models examined. This is well consistent with the relationship of tightly coupled processes of nucleation and elongation during disease progression. Under the assumption that tN reflects the stochastic appearance of nucleation over time in a cell population, then it is reasonable to consider that addt reflects the distributed elongation times in the affected neurons (increased extent of aggregates as the nucleation events proceed). According to the hypothetical effect of aggregates on neuronal cell (protective or toxic), we finally derived three different models to examine whether polyQ aggregation kinetics by a nucleated growth polymerization mechanism can predict the effects of polyQ-length on the rate of disease progression as well.
Two risk-based stochastic kinetic models for neuronal cell loss
where N0 is the number of neurons before neuronal cell death begins. The functions for r(t) were substituted as follows:
where r0 represents the initial probability of cell death and t0 represents the time before neuronal death begins, and r0e A corresponds to an increase in risk .
PolyQ-length dependence of neuronal cell loss by a cumulative damage model
We initially made the reasonable assumption that the extent of neuronal cell damage at disease onset would be nearly identical irrespective of polyQ-length when the influence of normal aging was ignored. Then, Figure 1C-E shows an example of the cell-loss kinetics per polyQ-length based on the cumulative-damage model. If the relationship between polyQ-length and age-of-onset (red line) could be explained by a sigmoidal function, the relative time courses of neuronal cell damage for each polyQ-length would be expected to be described by a sigmoidal function (Figure 1C, D). As noted, in the sigmoidal function, the risk of neuronal cell death with time for each repeat length is precisely reflected by the correlation between polyQ-length and age-of-onset (red line in Figure 1E).
PolyQ-length dependence of neuronal cell loss by a one-hit model
where xmin* is the minimum repeat length capable of producing the rare catastrophic event, and a is the age of disease onset with x = xmin*.
Figure 2C shows an example of the cell-loss kinetics per polyQ-length under the one-hit model. The relationship between polyQ-length and age of onset (red line) would be expected to be exponential. During disease progression, the probability of a one-hit event is distributed exponentially over time in keeping with the exponential correlation between the repeat-length and age-of-onset under the constant risk (red line, Figure 2D, E).
PolyQ-length dependence of age at onset by a nucleation event
Exponential relationship between polyQ-length and nucleation lag time
where Ncri is the critical number of nuclei required for polymerization in a given space, L is Avogadro’s number, Cmo is the bulk concentration of the expanded polyQ protein monomers, Ro is the initial rate of formation of stable nuclei, x min + is the repeat length number in the first structure that is sufficiently stable to form a nucleus, e b is the probability of nucleation at an individual repeat, and ΔG+1 is the change of free energy associated with one additional repeat.
Sum of square relationship among aggregation time, nucleation lag time and elongation time
Mathematical model describing the correlation between polyQ-length and age at onset
Distribution function for nucleation lag time in a homogenous cell population
Thus, if the nucleation rate over time acts as a constant risk for neuronal cell damage in a homogenous cell population, the probability of aggregate-free neurons or the ratio of intact neurons (N(t)/N0) as a function of time t would be expected to decline exponentially, consistent with the stochastic appearance of nucleation. It is also assumed that nucleation and elongation act concomitantly during disease progression, in keeping with the relationship (tagg2 = tN2 + tE2).
PolyQ-length dependence of neuronal cell loss by a stretched-exponential decay model
Striatal neurodegeneration in HD by a nucleated growth polymerization mechanism
Huntingtin is expressed in all cell types so far tested . However, the most vulnerable cells to the toxic effect of the mutation are the neurons in the striatum. There is a marked selective pattern of neuronal degeneration within the striatum. Medium-sized, spiny projection neurons are disproportionately affected early and most severely in the disease, while large and medium-sized aspiny interneurons are relatively spared. Volume changes of the caudate nucleus accurately predicted the onset of symptoms and are significantly correlated with disease progression . Moreover, the age of onset and CAG repeat length are significantly correlated with the extent of striatal atrophy [33, 34]. Already, 10 years before the onset of the clinical symptoms, a significant neuronal loss is observed . The loss of medium-sized spiny neurons in the caudate nucleus thus reflects the symptom onset and disease progression. These findings suggest that the correlation between polyQ-length and age of HD onset is mainly governed by the time required for a particular neuronal loss (per Q repeat) in the nucleus and support the legitimacy of modeling approach to predict the time course of neurodegeneration in the striatum.
where ς* represents nucleation rate-associated constant described by Eq. 15, tN0 represents the time before a series of nucleation events appears, and F(addt) represents the function of the additional time due to the polyQ-length independent factor.
The sum of square relationship in Eq. 17 (t2 = tN2 + addt2) is well consistent with the relationship of tightly coupled processes of nucleation and elongation during disease progression. In some neurons, polyQ aggregates can be detected prior to the onset of symptom of the disease. Under the assumption that tN reflects the stochastic appearance of nucleation over time in a cell population, then it is reasonable to consider that addt in Eq. 17 reflects the distributed elongation time in the affected neuron (increased extent of aggregates as the nucleation events proceed). This allows us to examine whether polyQ aggregation kinetics by a nucleated growth polymerization mechanism can reasonably explain the correlations between genotypes and phenotypes, including the age of onset and the rate of disease progression. According to the hypothetical effect of aggregates on neuronal cell (protective or toxic), we further introduced the three different models (Model A-C) which may potentially describe the time course of neurodegeneration in the striatum. When addt in Eq. 17 was substituted to tE (elongation time), from the value of tE2 at the onset of disease (tE-onset2), tE2 can be varied from 0 to tE-onset2 at the initiation of neuronal loss.
where k * is the elongation rate-associated constant.
Model B (tE2 = tE-onset2 at the initiation of neuronal loss): The kinetics of neuronal cell loss in Model B is schematically shown in Additional file 2: Figure S2. PolyQ aggregate itself is required to induce neuronal cell damage, and toxic to the cell in the striatum. Nucleation is a prerequisite for the formation of toxic aggregates. F(tE) = tE-onset2, constant value.
Model C (0 < tE2 < tE-onset2 at the initiation of neuronal loss): The kinetics of neuronal cell loss in Model C is schematically shown in Additional file 3: Figure S3. A specific conformation of polyQ aggregates is required to induce neuronal cell damage in the striatum. However, further growth in the extent of the aggregate reduces the risk of neuronal damage by that specific conformation. F(tE) (black line) is variable function that depends on the value of tE2 at the initiation of neuronal loss. The intermediate product of polyQ aggregates via a pathway of nucleated growth polymerization is toxic to the cell.
Clinical data from patients with mutations in relevant genes, including 308 patients with SCA3 and 312 patients with HD, were derived from earlier reports [36–40]. Patients with homozygous mutations were excluded.
To elucidate the rate of disease progression in SCA3, we used correlations between CAG repeat-length and quantified progression in brain atrophy as visualized by MR imaging. Abe et al., working with 30 patients with SCA3, reported significant correlations between the CAG repeat number and the extent of atrophy (divided by age at the time of examination) in the pontine tegmentum and midbrain . To adjust for individual variations in the size of the skull, the anteroposterior diameters of the pontine tegmentum and midbrain were expressed as a ratio to the distance between the nasion and the inion. These ratios in each SCA3 patient were subtracted from the grand mean of the same ratio in all of the control cases as the degree of atrophy of the pontine tegmentum and midbrain. The cited authors found that there was no significant correlation between age and size of the anatomic structures of concern (no significant effect of normal aging on the atrophy).
To elucidate the effects of polyQ-length on the rate of disease progression in HD, we used the data of neuropathological change in a post-mortem study, where the extent of striatum cell loss divided by subject age was compared with CAG repeat-length , and also the observed relationship between repeat-length and the rate of functional decline, as assessed by Quantified Neurological Examination (QNE) scoring administered over time to patients in a large cohort study . The QNE is an instrument for quantifying the number and severity of neurologic findings in HD . Factor analysis of the QNE items revealed three subscales of highly correlated items: measurement of chorea, an eye movement subscale, and the Motor Impairment Scale. Motor Impairment scores are highly correlated with striatal atrophy in the course of disease. CAG repeat-length was significantly associated with the rate of progression of these clinical measures except chorea .
where ϵ represents residual error. Linear regression analysis was then applied to determine q or addt2 values by identifying the points at which the R2 were identical for a quadratic curve and a linear model with the best fitting a linear relationship. Models were evaluated using R2 numbers, the F-test, and analyses of residual error to test whether the assumptions of the regression are reasonably satisfied. The small number of individuals with the shortest and longest repeat sizes precluded rigorous statistical analysis of these patients. Had such an analysis been conducted, the data would have overwhelmed other information and thus impacted excessively on the model parameters.
Estimating the effect of normal aging on neuronal loss in the caudate nucleus
We initially made the reasonable assumption that the extent of neuronal cell damage at the onset of disease was nearly identical irrespective of the polyQ-length when the influence of normal aging was ignored. If the time required for a particular neuronal loss in the caudate nucleus for each repeat length reflects a correlation between repeat length and the age of onset, and if such a correlation (polyQ-length versus nucleation lag time) were exponential in nature, eliminating the effect of age on neuronal loss in the caudate nucleus would be expected to yield a higher R2 value for the best fit of a linear relationship between the logarithm of tN at the age of onset and polyQ size. We first hypothesized that the loss of neurons in the nucleus was 30% of baseline number at the onset of disease, irrespective of polyQ length. Then we examined the gradual effect of age on neuronal loss. The neuron decreased in a linear manner by 0.08 ~ 0.16% per year of normal aging, in the interval 20 ~ 30 years of age. From there, we determined individual R2 values for the correlations between the logarithms of tN and polyQ size. Recent MR imaging studies of volumetric and diffusion tensor imaging (providing a quantitative assessment of the microscopic diffusion properties of water in living tissue) suggest that age-related degenerative change, which is thought to reflect neuronal loss in the caudate nucleus, could be well described by a linear function [44–46]. Therefore, we used a linear model.
Correlation between polyQ-length and age of onset in patients with SCA3
Progression of illness in SCA3 patients may be expressed by the cumulative damage
Correlation between polyQ-length and age of onset in patients with HD
Progression of illness in HD patients can be expressed by the nucleated growth polymerization mechanism
We derived three different models (Model A-C) which may potentially describe the time course of neurodegeneration in the striatum (see Methods), and examined whether polyQ aggregation kinetics by a nucleated growth polymerization mechanism can explain the effects of polyQ-length on the rate of disease progression as well.
By longitudinal analysis of caudate volume visualized by MR imaging in 40 HD gene-positive individuals, Hobbs et al. found that a difference in caudate volume between HD patients and controls was evident 14 years before motor disease onset, at which time the caudate volume was about 30% lower than the baseline value . Around 20-30% of neurons within the caudate may already be lost prior to the onset of any motor related symptoms of the disease . Therefore, we first hypothesized that neuronal loss in the caudate nucleus commences 14 years prior to disease onset, and that 30% of neurons within the caudate is decreased from the baseline at symptom onset. Because there is a markedly selective pattern of loss for the striatal neurons, we also first considered that the β value in Eq. 17 and Eq. 18 is close to 1 (the susceptibility of the affected neurons to polyQ toxicity is nearly homogenous, mono-exponential decay [18, 48]). Thereby, if the influence of normal aging was ignored, the slope of linear regression line (Eq. 20) derived from the regression analysis of the correlation between polyQ-length and age-of-onset is expected to be identical during disease progression (Figure 2E). The time course of neuronal loss in the caudate nucleus can be estimated by the regression model. We also estimated the effects of normal aging on neuronal loss in the caudate nucleus (see Methods).
When we used Model A to estimate the effect of age on neuronal loss in the caudate nucleus (i.e., after the regression model (Figure 6C) was adjusted to reflect a decrease with neuronal cell number by 0.15% per year of normal aging from the age of 25 years), the regression analysis using Eq. 20 with natural log-transformed tN values against polyQ size provided the best fit to a linear model (red arrow in Additional file 1: Figure S 1) when tE2 was 217, yielding the highest R2 value of 0.592 (data not shown). We calculated the value of tNo in Eq. 18 in accordance with model A. The value of ς* in Eq. 18 was obtained for each polyQ-length using the values for tN0 (blue arrow) and tN at the onset of disease (red arrow) (Additional file 1: Figure S 1). The time course of neuronal loss for each repeat-length was calculated and then recalibrated to reflect the influence of normal aging.
We also calculated the time course of neuronal loss in Model A when neurons losses account 20, 40 or 50% of baseline number at the onset of disease. Similarly, the estimated time courses of neuronal loss also precisely predicted the effects of polyQ-length on the rate of neuropathological change (data not shown). However, by comparing of the progression of QNE score against disease duration, we found that the estimated progression of neuronal loss in Model A precisely reflected the association between polyQ-length and clinical progression when we hypothesized neuronal loss account 20 or 30% of baseline at disease onset (Figure 7B-E).
Similarly, we calculated the time course of neuronal loss in Model B and Model C when neurons losses account 30% of baseline number at the onset of disease (Additional file 2: Figure S 2, Additional file 3: Figure S 3). In contrast to Model A, the time course of neuronal loss in Model B and Model C cannot reflect the effects of polyQ-length on the neuropathological change (Figure 7F, H), nor the association between polyQ-length and clinical progression assessed using QNE scoring (Figure 7G, I). In Model B and Model C, polyQ aggregate itself is thought to be required to initiate neuronal loss, and nucleation is a prerequisite for the formation of toxic aggregates. The time course of neuronal loss in Model C was calculated when tE2 at the initiation of neuronal loss = 100.
The rate of neuronal loss estimated using the mathematical model (Eq. 18) can precisely predict the correlation between repeat length and age of onset, as well as the association of repeat length with the rate of disease progression. These results suggest that nucleation is sufficient to initiate neuronal loss (Model A), and that around 20-30% of neurons within the caudate nucleus are lost at the onset of disease. However, our results cannot deny the possibility that a specific conformation of polyQ aggregates is required to induce neuronal cell damage (Model C). In Model C, tE2 at the initiation of neuronal loss is variable (0 < tE2 < 217). Then, Model C is nearly identical to Model A when the value of tE2 at the initiation of neuronal loss gets closer to 0.
The precise determination of the β value will be required for a large cohort-based longitudinal study in patients with the various CAG repeat length. Using Model A, we tested whether the β value is actually expected to be close to 1 or not. We examined the time courses of neuronal loss in the caudate nucleus using different values for the β parameter (β = 0.95, 0.9 and 0.8), and compared our results to the effects of polyQ-length on the rate of neuropathological change (Figure 7A). The relative risks of neuronal damage for each repeat-length were calculated in a manner similar to that shown in Figure 7A for the age at 30% neuronal loss and 65% neuronal loss (data not shown). Our results suggest the range of β value falls in a range of 1 > β > 0.95, and suggest that the susceptibility of the affected neurons to polyQ toxicity in the caudate nucleus is nearly homogeneous in the early and middle phases of HD. These results are well consistent with the reports by Miller et al.  using an automated microscope that tracked thousands of primary cultured striatal neurons individually over their entire lifetime. They found that until 6 days after the transfection of mutant HD gene, the kinetics of cell death showed a constant risk. This duration corresponds to the early and middle phases of the disease.
The function described by Langbehn et al. (Eq. 11)  also showed the excellent fit to the data obtained from the correlation between polyQ-length and age of onset in patents with HD (Figure 6E). However, using the regression model shown in Figure 6E, we found that the simple sum of relationship t = tN + addt (h)] could not predict the effects of polyQ-length on the rate of disease progression in HD (data not shown).
Increased understanding of various polyQ diseases has revealed some common mechanistic features attributable to the existence of expanded polyQ tract per se[1, 2, 50]. However, recent studies have found multiple pathways underlying disease-related polyQ protein aggregation [6–8, 51]. Tissues from individuals with HD contain mixtures of both elongation-competent and elongation-incompetent polyQ aggregates, suggesting the presence of multiple aggregates differing in both structure and toxicity . Therefore, we must critically question whether alternative aggregation pathways contribute to possible differences in the mechanisms of polyQ disease pathogenesis.
Using polyQ-length as an index, we have here elucidated a relationship between aggregation pathways and disease onset or progression, and also an association between age at disease onset and rate of disease progression. Although disease mechanisms in polyQ disorders share unifying features, our modeling approach based on clinical data suggests that two different mechanisms may be involved in the pathogenesis of these conditions. Any quantitative connection between the relative risk of cell death for different repeat-lengths (as derived from the regression model for SCA3, Figure 5A), and a toxic effect of intermediate ataxin-3 aggregates, remains undetermined. However, our finding that correlations between genotypes and phenotypes, including both age at disease onset and rate of disease progression, could be reasonably explained using two distinct kinetic models corresponding to alternative pathways of aggregation, strongly support a central role for polyglutamine-mediated aggregation in disease pathogenesis.
Our results suggest that the time course of neurodegeneration in SCA3 may be represent by the cumulative damage model. There are many failure laws corresponding to cumulative damage for aging systems, and the most famous one in biology is the Gompertz law with exponential increase of the failure rates with age (Eq. 3), which is observed for many biological species including humans and is usually applicable within some age windows rather than the entire range of all possible ages [53, 54]. The correlation between polyQ-length and age of onset in patents with SCA3 showed the best fit with the Gompertz function among the models examined (Figure 4). The other model describing the cumulative damage might be possible to be a better fit than the Gompertz function. However, it is required for a large cohort longitudinal study to determine whether such a model also show a better fit to the association between polyQ-length and the rate of disease progression. We also acknowledge that an essential condition for a cumulative damage model is that the rate of neurodegeneration is accelerated over years, but this was not shown in the present study. Compared to the other polyQ diseases, such an acceleration of disease progression in SCA3 was reported using clinical measure, but this study lack the relation to polyQ-length . Very little longitudinal neuroimaging data are available for SCA3, and no study has examined the extent of neuronal cell damage at the onset of disease or its relationship (if any) to a particular brain structure. Further study are warranted, such a detailed longitudinal study that considers polyQ-length, including the effects of normal aging and clinical manifestations; this should confirm the sigmoidal kinetic nature of disease progression and clarify whether atrophy of the pontine tegmentum can be used as a biomarker of disease progression in SCA3.
In a one-hit model of neurodegeneration by Clarke et al., the death of a neuron is initiated randomly in time by a single, rare catastrophic event and the death of any given cell is independent of that of any other cell [18, 56]. They further found that the one-hit model of neurodegeneration can be improved with stretched exponential decay models, which most easily fit data in which the rate of death decreases over time, are consistent with multiple populations of cells coexisting .
Our mathematical model (Eq. 18) describing the striatal neurodegeneration in HD consists with the one-hit model. In our model, polyQ-length dependent nucleation is considered to be a one-hit event. However, one important difference to the one-hit model exists. Using polyQ-length as an index, we demonstrated that even when we used a stretched-exponential decay model it could not fully explain the correlation between polyQ-length and age-of-onset in patients with HD, nor the association of polyQ-length with the rate of disease progression (Figure 3). By the regression analysis shown in Figure 6 and the modeling approach for the disease progression shown in Figure 7, we found that in addition to the nucleation event, the polyQ-length independent factor (addt in Eq.13 and 17) significantly contributes to the progression of neurodegenerative process. The data, moreover, suggest that its protective role against polyQ toxicity. Under the assumption that tN in Eq. 17 reflects the stochastic appearance of nucleation over time in a cell population, then it is reasonable to consider that the polyQ-length independent factor reflects the distributed elongation times in the affected neurons because of the consistent figure of Eq. 10 and 13 and the relationship of tightly coupled processes of nucleation and elongation during disease progression. This allows us to examine whether polyQ aggregation kinetics by a nucleated growth polymerization mechanism could reasonably explain the genotype/phenotype correlations. However, the other scenario might be possible. For example, if dying neurons released a cyto-protective substance such as a neurotrophic factor into their environment and its protective effect can be expressed by the sum of square relationship as t2 = tN2 + addt2 (Eq.17), then the concentration of that factor will increase as more neurons affected, causing a concomitant decline in the risk of cell death. The functions in Eq. 18 (Model A) predict that the stochastic appearance of nucleation of mutant htt proteins acts as the constant risk of neuronal cell death over time, while elongation reduces the risk against nucleation in proportion to the increased extent of the aggregates during disease progression. Aggregate formation occurs via intrinsic properties of misfolded proteins, and is influenced by the environmental factors. Anyway, these scenarios suggest that although the initiation of the neurodegenerative process occurs randomly in time as a series of independent events for each neuron, the progression of the neurodegenerative process may be influenced by the other cells.
Using an automated microscope that tracked thousands of primary cultured striatal neurons individually over their entire lifetime, Miller et al. found that a specific monomeric conformer of the mutant htt protein strongly predicted neuronal cell death, and that increasing polyQ length preferentially increased the abundance of this conformer . Nagai et al. analyzed the structural changes among purified polyQ protein in vitro and found that expanded polyQ proteins undergo a conformational transition to a cytotoxic β-sheet-dominant structure in the monomeric state . In contrast to conventional models of nucleated growth polymerization, the in vitro aggregation kinetics of polyQ peptides show that the critical nucleus—the number of monomeric units comprising the nucleus—is equal to 1, suggesting that the rate-limiting nucleation process of polyQ aggregation is the folding of the mutated protein monomer . Our modeling is compatible with the in vitro-derived aggregation kinetics of polyQ peptides, and demonstrates that nucleation is sufficient to initiate neuronal loss in the striatum. Taken together, these findings strongly suggest that nucleation is a critical step in gaining toxic effects to the cell. However, we cannot deny a principal pathogenic role for soluble oligomeric aggregates of mutant htt proteins, if they are made of a small number of monomeric units via a pathway of nucleated growth polymerization. In this case, we would expect the kinetics of cell death to closely fit Model A (corresponds to the situation where Model C is nearly identical to Model A when the value of tE2 at the initiation of neuronal loss gets closer to 0).
Arrasate et al. found that in cultured striatal neurons, among cells with comparable expression levels of the htt fragment, those that formed inclusion bodies were less likely to die than those that did not. The author suggested that inclusion body formation reduces the risk of neuronal death by decreasing the levels of toxic monomeric forms of mutant htt . Our results well support these findings, although in our mathematical model, the risk of neuronal cell death decreases in proportion to increases in the extent of aggregates, rather than the formation of inclusion bodies itself. Thus, at least in the caudate nucleus, the pathological cellular effects of HD likely accrue via a pathway of nucleated growth polymerization, as represented by the mathematical model given in Eq. 18.
Toxic soluble oligomer/pre-fibrillar aggregates have been implicated in many other neurodegenerative conditions, including Alzheimer’s disease and Parkinson’s disease [11, 59, 60]. If, such aggregates play a major role in disease pathogenesis via a cumulative damage mechanism, we would expect that the time courses of neuronal cell damage would fit a sigmoidal function, as shown in the case of SCA3 (Eq. 3). However, for example, recent positron emission tomography studies of Parkinson’s disease have invariably shown exponential declines in nigrostriatal dopamine function over time [61–63], consistent with a one-hit mechanism of neurodegeneration. A heterogeneous population of soluble oligomeric species of α-synuclein (which is believed to be a major player in the pathogenesis of Parkinson’s disease) has been identified as forming via different aggregation pathways . If toxic soluble oligomers occur via a pathway of nucleated growth polymerization, we would expect the kinetics of neuronal cell damage to closely fit an exponential function, as shown in the case of HD (Eq. 18). We propose, therefore, that at least these two distinct kinetic models, which are both based on the aggregation of misfolded proteins, could explain the gain of toxic functions in neurodegenerative disorders.
Although disease mechanisms are superficially attributable to the existence of expanded polyQ per se, our findings suggest that two different mechanisms, reflecting alternative pathways of aggregation, may be involved in the pathogenesis of polyQ diseases. We successfully derived a quantitative connection between polyQ aggregation and neurodegenerative processes in HD, including the time of disease onset and the progression of illness in HD patients. Finally, we developed the mathematical model by which the time course of striatal neurodegeneration in HD can be precisely predicted. The results of our modeling approach suggest that neurodegeneration occurs by different mechanisms for the initiation and progression of disease processes. The repeat-length dependent one-hit event acts as a constant risk for neurodegeneration, while the repeat-length independent factor plays a significant protective role against the risk by the on-hit events in the progression of HD. Their relationship could be expressed by the sum of square relationship. These processes can be well explained by the nucleated growth polymerization mechanism of polyQ aggregation, providing a new insight into the framework for relating aggregation kinetics with molecular mechanism underlying neurodegenerative process.
We thank polyglutamine disease patients worldwide, and their attendant neurologists, for the patient outcome data used in the present study. This study was funded by the Tokyo Metropolitan Government.
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