- Short report
- Open Access
The gene coding for PGC-1α modifies age at onset in Huntington's Disease
- Patrick Weydt†1Email author,
- Selma M Soyal†2,
- Cinzia Gellera3,
- Stefano DiDonato3,
- Claus Weidinger2,
- Hannes Oberkofler2,
- G Bernhard Landwehrmeyer1 and
- Wolfgang Patsch1
© Weydt et al; licensee BioMed Central Ltd. 2009
- Received: 24 October 2008
- Accepted: 08 January 2009
- Published: 08 January 2009
Huntington's disease (HD) is one of the most common autosomal dominant inherited, neurodegenerative disorders. It is characterized by progressive motor, emotional and cognitive dysfunction. In addition metabolic abnormalities such as wasting and altered energy expenditure are increasingly recognized as clinical hallmarks of the disease. HD is caused by an unstable CAG repeat expansion in the HD gene (HTT), localized on chromosome 4p16.3. The number of CAG repeats in the HD gene is the main predictor of disease-onset, but the remaining variation is strongly heritable. Transcriptional dysregulation, mitochondrial dysfunction and enhanced oxidative stress have been implicated in the pathogenesis. Recent studies suggest that PGC-1α, a transcriptional master regulator of mitochondrial biogenesis and metabolism, is defective in HD. A genome wide search for modifier genes of HD age-of-onset had suggested linkage at chromosomal region 4p16-4p15, near the locus of PPARGC1A, the gene coding for PGC-1α. We now present data of 2-loci PPARGC1A block 2 haplotypes, showing an effect upon age-at-onset in 447 unrelated HD patients after statistical consideration of CAG repeat lengths in both HTT alleles. Block 1 haplotypes were not associated with the age-at-onset. Homozygosity for the 'protective' block 2 haplotype was associated with a significant delay in disease onset. To our knowledge this is the first study to show clinically relevant effects of the PGC-1α system on the course of Huntington's disease in humans.
- Haplotype Block
- OXPHOS Gene
- Informative Single Nucleotide Polymorphism
- Linkage Disequilibrium Matrix
- Mitochondrial OXPHOS Gene
Huntington's disease (HD [MIM 143100]; http://www.ncbi.nlm.nih.gov/Omim/) is one of the most common autosomal-dominant inherited neurodegenerative disorders. Clinically HD is characterized by motor and cognitive impairment, accompanied by a variable degree of personality change and psychiatric illness. Advanced stages of HD are characterized by severe emaciation, despite a strong appetite and increased caloric intake[2, 3]. HD is relentlessly progressive and patients succumb to the disease typically 10–25 years after disease onset. In 1993, a CAG trinucleotide repeat expansion encoding an elongated polyglutamine tract in the huntingtin (HTT) protein was found to cause HD. The number of CAG repeats in the htt gene is the most important, but not the only determinant of age at onset of HD. Depending on the populations studied, the number of CAG repeats in htt accounts for up to 73% of the variance in age at onset. The remaining variation is strongly heritable. Hence, modifier genes must contribute to the variability in age at onset of HD. The genetic modifiers identified so far include the huntingtin associated protein 1 (HAP1) gene and the ubiquitin carboxy-terminal hydrolase L1 (UCHL1) gene [7–9]. The MAPS study, a genome-wide scan for modifier genes of age at onset using micro-satellite markers at a 10-cM density, suggested linkage at chromosomes 4p16, 6p21-23 and 6q24-26 and more marginal associations at several other sites, including 4p15 (marker D4S3403).
Recently, two independent groups presented evidence that the transcriptional co-regulator peroxisome proliferator-activated receptor γ (PPARγ) coactiavtor 1α (PGC-1α) plays a role in the neurodegeneration of HD [11–13]. PGC-1α regulates the expression of mitochondrial OXPHOS genes and endogenous antioxidants[14, 15]. Mutant but not wild-type HTT down regulates the expression of this gene set[11, 12]. Lack of PGC-1α expression produces a HD-like phenotype in mice and over-expression of PGC-1α can antagonize mutant HTT toxicity in vitro and in vivo [11, 12, 16, 17]. PPARGC1A, the gene encoding PGC-1α, is localized on chromosome 4p15.1-2, a region, in proximity to one of the HD modifier loci identified in the MAPS genome scan. We therefore hypothesized that PPARGC1A polymorphisms are associated with the age at onset in HD patients.
We ascertained possible associations of age at onset with PPARGC1A in an Italian cohort of 449 HD patients. The age at onset was considered as the time when motor signs diagnostic of HD were first noted. All patients have been diagnosed genetically by the same laboratory at the Istituto Neurologico C. Besta of Milano. As to the clinical evaluation, 139 patients were neurologically assessed at the Outpatients Neurogenetic Clinic facility of the C. Besta Institute (either by Stefano Di Donato, MD, and Caterina Mariotti, MD, Unit of Biochemistry and Genetics, or Paola Soliveri, MD, Division of Movement Disorders, Istituto Neurologico C. Besta, Milano). The remaining 310 patients were clinically assessed by expert neurologists from Italian Neurological Centers other than the Istituto Neurologico C. Besta, and then referred to us for molecular diagnosis. As age at onset in HD is difficult to ascertain, and susceptible to considerable variation on the basis of environmental and genetic factors, we set the alleged age at onset as the time when motor signs diagnostic of HD were first noted. With regard to patients referred from other neurological centres, we (SD and CG) carefully re-checked each file for age at onset. For most patients the presumed motor onset was clearly indicated; for a minority of patients, however, we found that the neurological onset came out to be different from the one suggested by the referring neurologist (possibly indicating the behavioural-psychiatric onset), and accordingly reset the disease onset as the age at motor onset.
The population comprised 215 male and 234 female unrelated HD patients. The mean (SD, median, range) of age at onset was 48.9 (13.9, 49, 6–80) years. The mean (SD, median, range) of HD CAG repeat size as determined in a single diagnostic laboratory was 45.3 (5.5, 44, 37–90). HD CAG repeat size explained 61% of the variation in age at onset and no sex-specific difference in age at onset or HD CAG repeat size was observed.
DNA was isolated from peripheral white blood cells. By sequencing phased chromosomes and typing eight informative single nucleotide polymorphisms (SNPs) of PPARGC1A in various populations, we previously identified two haplotype blocks, termed block 1 and 2, each comprising five common haplotypes. The boundary between the two haplotype blocks is located in intron 2. Haplotype block 1 extends 20 kb upstream of the translational start site, while haplotype block 2 extends < 20 kb beyond the proximal poly A signal. Four SNPs discriminatory for PPARGC1A haplotype block 1 at gene positions -3974 A/G (rs2970865), -3833 A/C (rs1878949), -1694 T/C (rs17576121), and -1437A/G (rs2970870) as well as four haplotype block 2 SNPs at gene positions +75657 C/T (rs2970847), +75919 C/T (rs8192678), +76059 C/T (rs3755863) and 94581 C/T (rs6821591) were typed in 389 HD patients. SNPs rs2970847, rs8192678, rs3755863 and rs6821591 in the coding region correspond to positions +1302, +1564, +1704 and +2962, respectively, in the mRNA sequence relative to the translational start site. Among variant sites, only rs8192678 results in an amino acid change (Gly > Ser). SNP qualifiers refer to database entries http://www.ncbi.nlm.nih.gov/SNP/. PPARGC1A haplotype block 1 SNPs were determined using TaqMan Genotyping Assays (Applied Biosystems, Warrington, UK) C_1643250_10, C__1643249_10, C_27842167_10 and C_1643241_10. TaqMan Assays for haplotype block 2 SNPs were PGC1ASNPEI_301 (custom), C_1643192_10, C_25992571_10 and C_26497328_10, respectively. The overall genotyping success rate was 99%. Success rates for all SNPs typed were > 99% with the exception of rs1878949 which was 96%. In several subjects in whom typing of rs1878949 was unsuccessful, the presence of the region harboring the SNP was verified by sequencing to exclude major sequence deviations. Correct typing results were verified in > 15% of subjects by restriction enzyme digestion and/or sequencing.
Associations of SNPs with age at onset of HD were ascertained in linear models. Logarithmically transformed age at onset was used as the dependent variable and individual SNPs, normal and expanded CAG repeat sizes as well as their interactions as independent variables. For testing associations between haplotypes and age at onset, we used the haplo.score software, which provides both global and haplotype-specific tests. Adjustments were made for normal CAG repeat, expanded CAG repeat size and their interaction. The THESIAS software http://genecanvas.ecgene.net/downloads was used to estimate standardized pairwise linkage disequilibria (LD) expressed in terms of D', haplotype frequencies and covariate-adjusted mean effects of haplotypes on logarithmically transformed age at onset.
PPARGC1A Block 2 Haplotypes and Age at Onset of HD
PPARGC1A rs7665116 and Age at Onset in the HD Cohort
HD CAG*non-HD CAG
PPARGC1A rs6821591 and Age at Onset in the HD Cohort
HD CAG*non-HD CAG
PPARGC1A rs7665116 and rs6821591 Haplotypes and Age-at-Onset of HD
Here we report the presence of a common polymorphism and a common haplotype in PPARGC1A that are associated with a delay in age at onset of motor symptoms in patients with Huntington's disease. This clinical finding complements independent mechanistic studies on transgenic animals and human post mortem brain tissue, which demonstrated that impairment of the PGC-1α system contributes to the pathology of experimental HD. Lin et al. showed that mutant htt suppresses the expression of PGC-1α, while Weydt et al. found that mutant htt can inhibit the effects of PGC-1α on the expression of its target genes [12, 16]. These two concepts are not mutually exclusive, as PGC-1α may induce its own expression via a feed-forward loop[15, 24]. Our association study in humans now suggests that PPARGC1A indeed modifies the age at onset of HD and hence provide critical support for a role of PGC-1α in the pathogenesis of HD in humans.
It should be noted, that clinical phenotypes reminiscent of HD have been described without mutations in the HD gene. Interestingly, chromosomal region 4p15.3 has been implicated in a recessive, progressive neurodegenerative Huntington-like disorder (HDL3 [MIM 604802]; http://www.ncbi.nlm.nih.gov/Omim/). It is thus possible that "loss of function" mutations in PPARGC1A can cause a recessive HD-like disease as suggested by gene deletion studies in mice[16, 17].
The arguments presented here provide first support from observations in humans for the concept that PGC-1α failure contributes to the pathogenesis of HD. If our results are confirmed in other populations, the identification of the functional SNP(s) may provide mechanistic insight into the pathogenesis of HD and may have important implications for the delineation of therapeutic targets[27, 28].
This study was supported by grants from the Fonds zur Förderung der wissenschaftlichen Forschung (FWF, Project P19893-B05) and the Land Salzburg and the Verein für Medizinische Forschung Salzburg, Austria and grants from the CHDI Foundation (New Jersey, USA).
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